Publications

JOURNALS & FULL PAPERS IN CONFERENCE PROCEEDINGS 

Battaglia FP, Schnitzer MJ

Editorial overview: Large-scale recording technology: Scaling up neuroscience

Current Opinion in Neurobiology (2015)

http://dx.doi.org/10.1016/j.conb.2015.03.002

 

Navratilova Z, Battaglia FP

CA2: It’s about time–and episodes

Neuron 58: 8-10. (2015)

http://dx.doi.org/10.1016/j.neuron.2014.12.044

 

Peelaerts W, Bousset L, Van der Perren A, Moskalyuk A, Pulizzi R, Giugliano M, Van den Haute C, Melki R, Baekelandt V.

α-Synuclein strains cause distinct synucleinopathies after local and systemic administration.

Nature 522(7556) 340-4 (2015)

http://dx.doi.org/10.1038/nature14547

 

Gysbrechts, B., Wang, L., Nguyen, N., Cabral, H., Navratilova, Z., Battaglia, F., Saeys, W., Bartic, C.

Light distribution and thermal effects in the rat brain under optogenetic stimulation. Journal of Biophotonics (2015).

DOI: 10.1002/jbio.201500106

 

Biró  I, Giugliano M.

A Reconfigurable Visual-Programming Library for Real-time Closed-loop Cellular Electrophysiology

Frontiers in Neuroinformatics 9:17 (2015) http://dx.doi.org/10.3389/fninf.2015.00017

 

Linaro, D., Couto, J., Giugliano, M.

Real-time Electrophysiology: Using Closed-loop Protocols to Probe Neuronal Dynamics and Beyond. 

Vis. Exp. (100), e52320, (2015)

doi: 10.3791/52320

 

Pullizzi R, Musumeci G, Van Den Haute C, Baekelandt V, Giugliano M

Wide-Field Photostimulation in in Vitro Cortical Networks: Consequences for the Emerging Reverberating Responses

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Milano, Italy, August 25-29, 2015.

 

Cabral HO, Fouquet C, Rondi-Reig L, Pennartz CMA, Battaglia FP

Single-trial properties of Place Cells in Control and CA1 NMDA receptor subunit 1-KO mice

Journal of Neuroscience 34(48):15861-9 (2014)

http://dx.doi.org/10.1523/JNEUROSCI.5320-13.2014

 

Cabral HO, Vinck M, Fouquet C, Pennartz CM, Rondi-Reig L, Battaglia FP

Oscillatory Dynamics and Place Field Maps Reflect Hippocampal Ensemble Processing of Sequence and Place Memory under NMDA Receptor Control

Neuron 81:402-415 (2014)

DOI: http://dx.doi.org/10.1016/j.neuron.2013.11.010

 

Barton J.P., Cocco S., De Leonardis E., Monasson R.

Large Pseudo-Counts and L2-Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models

Physical Review E 90, 012132 (2014)

http://dx.doi.org/10.1103/PhysRevE.90.012132

 

Nguyen, T., Navratilova, Z., Cabral, H., Wang, L., Gielen, G., Battaglia, F., Bartic, C.

Closed-loop optical neural stimulation based on a 32-channel low-noise recording system with online spike sorting.

Journal of Neural Engineering 11 (2014)

doi:10.1088/1741-2560/11/4/046005

 

Linaro, D., Couto, J, Giugliano, M.

Command-line cellular electrophysiology for conventional and real-time closed-loop experiments 

Journal of Neuroscience Methods 230:5-19. (2014) http://dx.doi.org/10.1016/j.jneumeth.2014.04.003

 

Mahmud M, Pulizzi R, Vasilaki E, Giugliano M

QSpike tools: a generic framework for parallel batch preprocessing of extracellular neuronal signals recorded by substrate microelectrode arrays

Frontiers in Neuroinformatics 8:26. (2014) http://dx.doi.org/10.3389/fninf.2014.00026

 

Barton J., Cocco S.

Ising Models for Neural Activity Inferred via Selective Cluster Expansion Structural and Coding Properties

Stat. Mech. P03002 (2013)

www.phys.ens.fr/~cocco/Art/articlejstat.pdf

 

Gysbrechts, B., Wang, L., Nguyen Do Trong, N., Cabral, H., Navratilova, Z., Battaglia, F., Saeys, W., Bartic, C.

Measurement of the optical properties of rat brain tissue using contact spatially resolved spectroscopy

In Popp, J. (Ed.), Tuchin, V. (Ed.), Matthews, D. (Ed.), Pavone, F. (Ed.), Biophotonics: Photonic Solutions for Better Health Care IV: Vol. 9129. SPIE Photonics Europe, 14-17 April 2014 (art.nr. 912936)

doi: 10.1117/12.2052367

 

Wang, L., Nguyen, T., Cabral, H., Gysbrechts, B., Battaglia, F., Bartic, C.

Closed-loop optical stimulation and recording system with GPU-based real-time spike sorting

In Popp, J. (Ed.), Tuchin, V. (Ed.), Matthews, D. (Ed.), Pavone, F. (Ed.), Biophotonics: Photonic Solutions for Better Health Care IV: Vol. 9129 (91293). SPIE Photonics Europe. Brussels, 14-17 April 2014 (pp. 91293U-1)

doi: 10.1117/12.2052098

 

 

CONFERENCE PARTICIPATIONS

Bernstein Conference Heidelberg Germany 2015

CNS Conference Prague, Czech Rep. 2015

IEEE Engineering in Medicine and Biology Society, Milano Italy 2015

Engineering in Medicine and Biology Society

Conference on Big data, Harvard University, Boston, USA, August 2015

Smell 15, KITP, Santa Barbara, USA, July 2015

CompBioSys Spring School, Aussois, France, April 2015

SPIE Photonics West 2015, San Francisco, USA, Febrauary 2015

Regulation and Inference in Biological Networks, Bardonnecchia, Italy, February 2015

Workshop on Phase transitions and emergent phenomena, Providence, USA, February 2015

Winter school on quantitative biology, ICTP, Trieste, Italy, December 2014

BRAIN-FETs 2014 – 1st Clustering Workshop on Future Emerging NeuroTechnologies, Genova, Italy, October 2014

Spin Glass 2014, Cargese, France, August 2014

FENS Forum 2014 Milan, Italy

SPIE Photonics Europe 2014, Brussels, Belgium,  April 2014

Neuroscience and Random Matrix Theory, Paris, France, March 2014

Exploring the role of computation in science: from biology to physics Saragosse, Spain, January 2014

Frontiers in Neurophotonics, Bordeaux, France, October 2013

Neurotechnix 2013, Algarve, Portugal, September 2013

CNS 2013 Meeting, Paris, France July 2013

Inference, Computation and Spin Glasses, Sapporo, Japan, July 2013

Netadis Summer School on Complex Systems Hillerod, Denmark, September 2013

East Asia Workshop on Statistical Physics 2013 Tokyo, Japan, October 2013

National Workshop on the Analysis and Inference of Networks Paris, France, November 2013

Paris Biological Physics Community Day Paris, France, December 2013

 

 

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